Webfacing Classpath Wierd-thing-happenning

Hi y'all
I created a webfacing project, ran it. Started the server, everything ok.
Then I create another and when the server starts it says , hey I can't find
this that and the other webfacing runtime thing.
Then, I check the .classpath file and discover that it is missing some
entries.

Any clues why it would it be doing this? WSAD 5.0

Bad classpath
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
    <classpathentry kind="var" path="SERVERJDK_PLUGINDIR/jre/lib/rt.jar"
        rootpath="SERVERJDK_SRCROOT"
sourcepath="SERVERJDK_PLUGINDIR/src.jar"/>
    <classpathentry kind="src" path="Java Source"/>
    <classpathentry kind="var" path="WAS_PLUGINDIR/lib/j2ee.jar"/>
    <classpathentry kind="var" path="WAS_PLUGINDIR/lib/webcontainer.jar"/>
    <classpathentry kind="var" path="WAS_PLUGINDIR/lib/ivjejb35.jar"/>
    <classpathentry kind="var" path="WAS_PLUGINDIR/lib/websphere.jar"/>
    <classpathentry kind="lib" path="Web Content/WEB-INF/lib/struts.jar"/>
    <classpathentry kind="output" path="Web Content\WEB-INF\classes"/>
</classpath>


Good classpath
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
    <classpathentry kind="var" path="SERVERJDK_PLUGINDIR/jre/lib/rt.jar"
        rootpath="SERVERJDK_SRCROOT"
sourcepath="SERVERJDK_PLUGINDIR/src.jar"/>
    <classpathentry kind="src" path="Java Source"/>
    <classpathentry kind="var" path="WAS_PLUGINDIR/lib/j2ee.jar"/>
    <classpathentry kind="var" path="WAS_PLUGINDIR/lib/webcontainer.jar"/>
    <classpathentry kind="var" path="WAS_PLUGINDIR/lib/ivjejb35.jar"/>
    <classpathentry kind="var" path="WAS_PLUGINDIR/lib/websphere.jar"/>
    <classpathentry kind="lib" path="Web Content/WEB-INF/lib/struts.jar"/>
    <classpathentry kind="lib" path="Web
Content/WEB-INF/lib/wfstruts.jar"/>
    <classpathentry kind="lib" path="Web Content/WEB-INF/lib/WFRun.jar"/>
    <classpathentry kind="lib" path="Web
Content/WEB-INF/lib/eserver_services.jar"/>
    <classpathentry kind="lib" path="Web Content/WEB-INF/lib/jt400.jar"/>
    <classpathentry kind="output" path="Web Content\WEB-INF\classes"/>
</classpath>