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I have played around with Subversion a little bit for Java development
but have never tried it for native iSeries development.

The CRTBNDRPG command has a SRCSTMF parameter that will allow you to
compile directly from the IFS. Most other compile commands require a
source member. From what I have read, storing your source on the IFS
also loses your source member text and the change date for each line of
source.

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