Optimising Java agents

Can anyone advise me on how I can optimise Domino Java agents from the
AS/400 JVM's point of view? I have some code which is running rather slowly
from Domino - similar code, run from an AS/400 command line outside
Domino, ran slowly until optimised to level 40 with CRTJVAPGM but now
shoots along. How can I do the same thing in Domino? The Java code seems to
be hiding inside the Domino database where I can't get at it.
Thanks a lot in advance
Mandy Shaw

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