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You may want to check if you or your system has a SystemDefault.properties
file.  We have seen even if you execute Java from the QIBM path, if you
have a java.version property set, it uses that version.  This is probably
equivalent to setting your JAVA_HOME env var.

For example, I have java.version set to 1.3. and running java from jdk14
returns a 1.3.1 version in QShell
      /QIBM/ProdData/Java400/jdk14/bin/java -version
      java version "1.3.1"

You can find the details here.  Similar info applies to V5R1.
http://publib.boulder.ibm.com/iseries/v5r2/ic2924/info/rzaha/sdpropf.htm


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